tag:blogger.com,1999:blog-2735750853096182491.post5948835617651073618..comments2023-04-26T06:22:39.785-07:00Comments on genetics for fun: Impute APOE and APOL1 with 23andMeUnknownnoreply@blogger.comBlogger7125tag:blogger.com,1999:blog-2735750853096182491.post-13323400919826724222017-03-14T22:53:18.822-07:002017-03-14T22:53:18.822-07:00how the heck do you interpret the output? Mine lo...how the heck do you interpret the output? Mine looks like this:<br /><br />19 44413463 rs2191562 G A . PASS . GT 0|0 0|0 0|0 0|0 0|0 0|0 0|0 0|0 0|0 0|0 0|0 0|0 0|0 0|0 0|0 0|0 0|0 0|0 0|0 0|0 0|0 0|0 0|0 0|0 0|0 0|0 0|0 0|0 0|0 0|0 0|0 0|0 0|0 0|0 0|0 0|0 0|0 0|0<br />... continues for many more linesAnonymoushttps://www.blogger.com/profile/01455585149930192996noreply@blogger.comtag:blogger.com,1999:blog-2735750853096182491.post-75984508920332457812016-08-30T08:56:04.436-07:002016-08-30T08:56:04.436-07:00Imputation does need phasing, so yes.Imputation does need phasing, so yes.freeseekhttps://www.blogger.com/profile/13892797134951166637noreply@blogger.comtag:blogger.com,1999:blog-2735750853096182491.post-79640911552634812012016-08-30T08:23:45.615-07:002016-08-30T08:23:45.615-07:00Did you take care of phasing?Did you take care of phasing?moxhttps://www.blogger.com/profile/03941384011066501118noreply@blogger.comtag:blogger.com,1999:blog-2735750853096182491.post-25089242357352331432015-09-29T11:36:35.164-07:002015-09-29T11:36:35.164-07:00That's fine. I think if people can handle comm...That's fine. I think if people can handle command-line stuff they'd easily be able to follow your instructions. I just wanted to provide an easier alternative. Hard to do that without actual access to the genomic data though.Lassehttps://www.blogger.com/profile/11749827605514389148noreply@blogger.comtag:blogger.com,1999:blog-2735750853096182491.post-50969994141094764542015-09-29T11:12:06.902-07:002015-09-29T11:12:06.902-07:00@Lasse this is interesting, but the whole point of...@Lasse this is interesting, but the whole point of my post was to be able to estimate your APOE genotype without uploading it to a third party. Being a very sensitive piece of information some people would rather not share that data.freeseekhttps://www.blogger.com/profile/13892797134951166637noreply@blogger.comtag:blogger.com,1999:blog-2735750853096182491.post-84116340990032985832015-09-29T10:53:25.448-07:002015-09-29T10:53:25.448-07:00I just made a prototype server to do just that. It...I just made a prototype server to do just that. It should be easier. Check it out:<br />www.impute.meLassehttps://www.blogger.com/profile/11749827605514389148noreply@blogger.comtag:blogger.com,1999:blog-2735750853096182491.post-54989054697954527352014-01-31T19:21:38.158-08:002014-01-31T19:21:38.158-08:00Seems like you haven't made this any less comp...Seems like you haven't made this any less complicated, unless you happen to use a minority OS like Linux or Mac.Anonymousnoreply@blogger.com